Abstract | Installation | Running Macarron | Input CSV files | Output Files | Run a demo in R | Using CSV files as inputs | Using dataframes as inputs | Running Macarron as individual functions | Advanced Topics | Generating the input chemical taxonomy file | Accessory output files | Macarron.log | modules_measures_of_success.csv | Maaslin2 results | Changing defaults | Filtering metabolic features based on prevalence | Minimum module size | Specifying fixed effects, random effects and reference | Command line invocation

MaAsLin2 User Manual | Contents | Description | Requirements | Installation | From command line | From R | How to Run | Input Files | Output Files | Run a Demo | Command line | In R | Session Info | Options | Troubleshooting